GraphAlignment

GraphAlignment

Bioconductor version: Release (2.14)

Graph alignment is an extension package for the R programming environment which provides functions for finding an alignment between two networks based on link and node similarity scores. (J. Berg and M. Laessig, "Cross-species analysis of biological networks by Bayesian alignment", PNAS 103 (29), 10967-10972 (2006))

Author: Joern P. Meier <mail at ionflux.org>, Michal Kolar, Ville Mustonen, Michael Laessig, and Johannes Berg.

Maintainer: Joern P. Meier <mail at ionflux.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GraphAlignment")

To cite this package in a publication, start R and enter:

    citation("GraphAlignment")

Documentation

PDF R Script GraphAlignment
PDF   Reference Manual
Text   LICENSE

Details

biocViews GraphAndNetwork, Network, Software
Version 1.28.0
In Bioconductor since BioC 2.2 (R-2.7)
License file LICENSE
Depends
Imports
Suggests
System Requirements
URL http://www.thp.uni-koeln.de/~berg/GraphAlignment/
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source GraphAlignment_1.28.0.tar.gz
Windows Binary GraphAlignment_1.28.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GraphAlignment_1.28.0.tgz
Mac OS X 10.9 (Mavericks)
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