Herper

DOI: 10.18129/B9.bioc.Herper    

The Herper package is a simple toolset to install and manage conda packages and environments from R

Bioconductor version: Release (3.12)

Many tools for data analysis are not available in R, but are present in public repositories like conda. The Herper package provides a comprehensive set of functions to interact with the conda package managament system. With Herper users can install, manage and run conda packages from the comfort of their R session. Herper also provides an ad-hoc approach to handling external system requirements for R packages. For people developing packages with python conda dependencies we recommend using basilisk (https://bioconductor.org/packages/release/bioc/html/basilisk.html) to internally support these system requirments pre-hoc.

Author: Matt Paul [aut] , Thomas Carroll [aut, cre] , Doug Barrows [aut], Kathryn Rozen-Gagnon [ctb]

Maintainer: Thomas Carroll <tc.infomatics at gmail.com>

Citation (from within R, enter citation("Herper")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Herper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Herper")

 

HTML R Script Herper
HTML R Script Quick Start
PDF   Reference Manual
Text   NEWS

Details

biocViews Infrastructure, Software
Version 1.0.0
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License GPL-3
Depends R (>= 4.0), reticulate
Imports utils, rjson, withr, stats
LinkingTo
Suggests BiocStyle, testthat, knitr, rmarkdown, seqCNA
SystemRequirements
Enhances
URL https://github.com/RockefellerUniversity/Herper
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Herper_1.0.0.tar.gz
Windows Binary Herper_1.0.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) Herper_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Herper
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Herper
Package Short Url https://bioconductor.org/packages/Herper/
Package Downloads Report Download Stats

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