IVAS

DOI: 10.18129/B9.bioc.IVAS    

Identification of genetic Variants affecting Alternative Splicing

Bioconductor version: Release (3.8)

Identification of genetic variants affecting alternative splicing.

Author: Seonggyun Han, Sangsoo Kim

Maintainer: Seonggyun Han <hangost at ssu.ac.kr>

Citation (from within R, enter citation("IVAS")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("IVAS", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IVAS")

 

PDF R Script IVAS : Identification of genetic Variants affecting Alternative Splicing
PDF   Reference Manual
Text   NEWS

Details

biocViews AlternativeSplicing, DifferentialExpression, DifferentialSplicing, GeneExpression, GeneRegulation, RNASeq, Regression, SNP, Sequencing, Software, Transcription
Version 2.2.0
In Bioconductor since BioC 3.1 (R-3.2) (3.5 years)
License GPL-2
Depends R (> 3.0.0), GenomicFeatures, ggplot2, Biobase
Imports doParallel, lme4, BiocGenerics, GenomicRanges, IRanges, foreach, AnnotationDbi, S4Vectors, GenomeInfoDb, ggfortify, grDevices, methods, Matrix, BiocParallel, utils, stats
LinkingTo
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SystemRequirements
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URL
Depends On Me IMAS
Imports Me
Suggests Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package IVAS_2.2.0.tar.gz
Windows Binary IVAS_2.2.0.zip
Mac OS X 10.11 (El Capitan) IVAS_2.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/IVAS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/IVAS
Package Short Url http://bioconductor.org/packages/IVAS/
Package Downloads Report Download Stats

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