To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("IWTomics")

In most cases, you don't need to download the package archive at all.

IWTomics

DOI: 10.18129/B9.bioc.IWTomics    

Interval-Wise Testing for Omics Data

Bioconductor version: Release (3.5)

Implementation of the Interval-Wise Testing (IWT) for omics data. This inferential procedure tests for differences in "Omics" data between two groups of genomic regions (or between a group of genomic regions and a reference center of symmetry), and does not require fixing location and scale at the outset.

Author: Marzia A Cremona, Alessia Pini, Francesca Chiaromonte, Simone Vantini

Maintainer: Marzia A Cremona <mac78 at psu.edu>

Citation (from within R, enter citation("IWTomics")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("IWTomics")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IWTomics")

 

PDF R Script Introduction to IWTomics
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, DifferentialExpression, DifferentialMethylation, DifferentialPeakCalling, GenomeAnnotation, MultipleComparison, Software, StatisticalMethod
Version 1.0.0
In Bioconductor since BioC 3.5 (R-3.4) (< 6 months)
License GPL (>=2)
Depends GenomicRanges
Imports parallel, gtable, grid, graphics, methods, IRanges, KernSmooth, fda, S4Vectors, grDevices, stats, utils, tools
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package IWTomics_1.0.0.tar.gz
Windows Binary IWTomics_1.0.0.zip
Mac OS X 10.11 (El Capitan) IWTomics_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/IWTomics
Package Short Url http://bioconductor.org/packages/IWTomics/
Package Downloads Report Download Stats

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