MACSQuantifyR

DOI: 10.18129/B9.bioc.MACSQuantifyR    

Fast treatment of MACSQuantify FACS data

Bioconductor version: Release (3.10)

Automatically process the metadata of MACSQuantify FACS sorter. It runs multiple modules: i) imports of raw file and graphical selection of duplicates in well plate, ii) computates statistics on data and iii) can compute combination index.

Author: Raphaël Bonnet [aut, cre], Marielle Nebout [dtc],Giulia Biondani [dtc], Jean-François Peyron[aut,ths], Inserm [fnd]

Maintainer: Raphaël Bonnet <raphael.bonnet at univ-cotedazur.fr>

Citation (from within R, enter citation("MACSQuantifyR")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MACSQuantifyR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MACSQuantifyR")

 

HTML R Script MACSQuantifyR_quick_introduction
HTML R Script MACSQuantifyR_simple_pipeline
HTML R Script MACSQuantifyR_step_by_step_analysis
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, DataRepresentation, FlowCytometry, GUI, Normalization, Preprocessing, Software
Version 1.0.0
In Bioconductor since BioC 3.10 (R-3.6) (< 6 months)
License Artistic-2.0
Depends
Imports readxl, graphics, tools, utils, grDevices, ggplot2, ggrepel, methods, stats, latticeExtra, lattice, rmarkdown, png, grid, gridExtra, prettydoc, rvest, xml2
LinkingTo
Suggests knitr, testthat, R.utils, spelling
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MACSQuantifyR_1.0.0.tar.gz
Windows Binary MACSQuantifyR_1.0.0.zip
Mac OS X 10.11 (El Capitan) MACSQuantifyR_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MACSQuantifyR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MACSQuantifyR
Package Short Url https://bioconductor.org/packages/MACSQuantifyR/
Package Downloads Report Download Stats

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