MeSHDbi

DBI to construct MeSH-related package from sqlite file.

Bioconductor version: Release (2.14)

The package is unified implementation of MeSH.db, MeSH.AOR.db, and MeSH.PCR.db and also is interface to construct Gene-MeSH package (org.MeSH.XXX.db). loadMeSHDbiPkg import sqlite file and generate org.MeSH.XXX.db.

Author: Koki Tsuyuzaki

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MeSHDbi")

Citation (from within R, enter citation("MeSHDbi")):

Documentation

PDF R Script MeSH.db
PDF   Reference Manual

Details

biocViews Annotation, AnnotationData, Infrastructure, Software
Version 1.0.1
In Bioconductor since BioC 2.14 (R-3.1)
License Artistic-2.0
Depends R (>= 3.0.1)
Imports methods, AnnotationDbi(>= 1.16.10), DBI, RSQLite, IRanges, Biobase
Suggests RUnit, BiocGenerics
System Requirements
URL
Depends On Me MeSH.AOR.db, MeSH.db, MeSH.PCR.db, meshr, org.MeSH.Aca.db, org.MeSH.Aga.PEST.db, org.MeSH.Ame.db, org.MeSH.Aml.db, org.MeSH.Ana.db, org.MeSH.Ani.FGSC.db, org.MeSH.Ath.db, org.MeSH.Atu.K84.db, org.MeSH.Bfl.db, org.MeSH.Bsu.168.db, org.MeSH.Bsu.Bsn5.db, org.MeSH.Bsu.RONN1.db, org.MeSH.Bsu.TUB10.db, org.MeSH.Bsu.W23.db, org.MeSH.Bta.db, org.MeSH.Cal.SC5314.db, org.MeSH.Cbr.db, org.MeSH.Cel.db, org.MeSH.Cfa.db, org.MeSH.Cin.db, org.MeSH.Cja.db, org.MeSH.Cpo.db, org.MeSH.Cre.db, org.MeSH.Dan.db, org.MeSH.Dda.3937.db, org.MeSH.Ddi.AX4.db, org.MeSH.Der.db, org.MeSH.Dgr.db, org.MeSH.Dme.db, org.MeSH.Dmo.db, org.MeSH.Dpe.db, org.MeSH.Dre.db, org.MeSH.Dse.db, org.MeSH.Dsi.db, org.MeSH.Dvi.db, org.MeSH.Dya.db, org.MeSH.Eco.536.db, org.MeSH.Eco.55989.db, org.MeSH.Eco.APEC01.db, org.MeSH.Eco.B.REL606.db, org.MeSH.Eco.BW2952.db, org.MeSH.Eco.CFT073.db, org.MeSH.Eco.E24377A.db, org.MeSH.Eco.ED1a.db, org.MeSH.Eco.HS.db, org.MeSH.Eco.IAI1.db, org.MeSH.Eco.IAI39.db, org.MeSH.Eco.K12.DH10B.db, org.MeSH.Eco.K12.MG1655.db, org.MeSH.Eco.KO11FL.db, org.MeSH.Eco.O103.H2.12009.db, org.MeSH.Eco.O111.H.11128.db, org.MeSH.Eco.O127.H6.E2348.69.db, org.MeSH.Eco.O157.H7.EC4115.db, org.MeSH.Eco.O157.H7.EDL933.db, org.MeSH.Eco.O157.H7.Sakai.db, org.MeSH.Eco.O157.H7.TW14359.db, org.MeSH.Eco.O26.H11.11368.db, org.MeSH.Eco.O26.H7.CB9615.db, org.MeSH.Eco.S88.db, org.MeSH.Eco.SE11.db, org.MeSH.Eco.SMS35.db, org.MeSH.Eco.UMN026.db, org.MeSH.Eco.UTI89.db, org.MeSH.Eqc.db, org.MeSH.Gga.db, org.MeSH.Gma.db, org.MeSH.Hsa.db, org.MeSH.Laf.db, org.MeSH.Lma.db, org.MeSH.Mdo.db, org.MeSH.Mes.db, org.MeSH.Mga.db, org.MeSH.Miy.db, org.MeSH.Mml.db, org.MeSH.Mmu.db, org.MeSH.Mtr.db, org.MeSH.Nle.db, org.MeSH.Oan.db, org.MeSH.Ocu.db, org.MeSH.Oni.db, org.MeSH.Osa.db, org.MeSH.Pab.db, org.MeSH.Pae.LESB58.db, org.MeSH.Pae.PA14.db, org.MeSH.Pae.PA7.db, org.MeSH.Pae.PAO1.db, org.MeSH.Pfa.3D7.db, org.MeSH.Pto.db, org.MeSH.Ptr.db, org.MeSH.Rno.db, org.MeSH.Sau.COL.db, org.MeSH.Sau.ED98.db, org.MeSH.Sau.M013.db, org.MeSH.Sau.MRSA252.db, org.MeSH.Sau.MSHR1132.db, org.MeSH.Sau.MSSA476.db, org.MeSH.Sau.Mu3.db, org.MeSH.Sau.Mu50.db, org.MeSH.Sau.MW2.db, org.MeSH.Sau.N315.db, org.MeSH.Sau.Newman.db, org.MeSH.Sau.RF122.db, org.MeSH.Sau.USA300FPR3757.db, org.MeSH.Sau.USA300TCH1516.db, org.MeSH.Sau.VC40.db, org.MeSH.Sce.S288c.db, org.MeSH.Sco.A32.db, org.MeSH.Sil.db, org.MeSH.Spo.972h.db, org.MeSH.Spu.db, org.MeSH.Ssc.db, org.MeSH.Syn.db, org.MeSH.Tbr.9274.db, org.MeSH.Tgo.ME49.db, org.MeSH.Tgu.db, org.MeSH.Vvi.db, org.MeSH.Xla.db, org.MeSH.Xtr.db, org.MeSH.Zma.db
Imports Me
Suggests Me

Package Downloads

Package Source MeSHDbi_1.0.1.tar.gz
Windows Binary MeSHDbi_1.0.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) MeSHDbi_1.0.1.tgz
Mac OS X 10.9 (Mavericks) MeSHDbi_1.0.1.tgz
Package Downloads Report Download Stats

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