To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MotifDb")

In most cases, you don't need to download the package archive at all.

MotifDb

An Annotated Collection of Protein-DNA Binding Sequence Motifs

Bioconductor version: Release (3.0)

More than 2000 annotated position frequency matrices from five public source, for multiple organisms

Author: Paul Shannon

Maintainer: Paul Shannon <pshannon at fhcrc.org>

Citation (from within R, enter citation("MotifDb")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MotifDb")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MotifDb")

 

PDF R Script MotifDb Overview
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews MotifAnnotation, Software
Version 1.8.0
In Bioconductor since BioC 2.11 (R-2.15)
License Artistic-2.0 | file LICENSE
Depends R (>= 2.15.0), methods, BiocGenerics, S4Vectors, IRanges, Biostrings
Imports rtracklayer
Suggests RUnit, MotIV, seqLogo
System Requirements
URL
Depends On Me
Imports Me rTRMui
Suggests Me motifStack, PWMEnrich, rTRM, vtpnet

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MotifDb_1.8.0.tar.gz
Windows Binary MotifDb_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) MotifDb_1.8.0.tgz
Mac OS X 10.9 (Mavericks) MotifDb_1.8.0.tgz
Browse/checkout source (username/password: readonly)
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