NetSAM

DOI: 10.18129/B9.bioc.NetSAM    

Network Seriation And Modularization

Bioconductor version: Release (3.7)

The NetSAM (Network Seriation and Modularization) package takes an edge-list representation of a network as an input, performs network seriation and modularization analysis, and generates as files that can be used as an input for the one-dimensional network visualization tool NetGestalt (http://www.netgestalt.org) or other network analysis.

Author: Jing Wang <jing.wang.2 at vanderbilt.edu>

Maintainer: Bing Zhang <bing.zhang at vanderbilt.edu>

Citation (from within R, enter citation("NetSAM")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("NetSAM")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NetSAM")

 

PDF R Script NetSAM
PDF   Reference Manual

Details

biocViews Network, Software, Visualization
Version 1.20.0
In Bioconductor since BioC 2.13 (R-3.0) (5 years)
License LGPL
Depends R (>= 2.15.1), methods, igraph (>= 0.6-1), seriation (>= 1.0-6), graph(>= 1.34.0)
Imports methods
LinkingTo
Suggests RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package NetSAM_1.20.0.tar.gz
Windows Binary NetSAM_1.20.0.zip
Mac OS X 10.11 (El Capitan) NetSAM_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/NetSAM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/NetSAM
Package Short Url http://bioconductor.org/packages/NetSAM/
Package Downloads Report Download Stats

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