To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("NetSAM")

In most cases, you don't need to download the package archive at all.

NetSAM

Network Seriation And Modularization

Bioconductor version: Release (2.14)

The NetSAM (Network Seriation and Modularization) package takes an edge-list representation of a network as an input, performs network seriation and modularization analysis, and generates as files that can be used as an input for the one-dimensional network visualization tool NetGestalt (http://www.netgestalt.org) or other network analysis.

Author: Jing Wang <jing.wang.2 at vanderbilt.edu>

Maintainer: Bing Zhang <bing.zhang at vanderbilt.edu>

Citation (from within R, enter citation("NetSAM")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("NetSAM")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NetSAM")

 

PDF R Script NetSAM
PDF   Reference Manual

Details

biocViews Network, Software, Visualization
Version 1.4.0
In Bioconductor since BioC 2.13 (R-3.0)
License LGPL
Depends R (>= 2.15.1), methods, igraph (>= 0.6-1), seriation (>= 1.0-6), graph(>= 1.34.0)
Imports methods
Suggests RUnit, BiocGenerics
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source NetSAM_1.4.0.tar.gz
Windows Binary NetSAM_1.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) NetSAM_1.4.0.tgz
Mac OS X 10.9 (Mavericks) NetSAM_1.4.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center