OLIN

DOI: 10.18129/B9.bioc.OLIN    

Optimized local intensity-dependent normalisation of two-color microarrays

Bioconductor version: Release (3.8)

Functions for normalisation of two-color microarrays by optimised local regression and for detection of artefacts in microarray data

Author: Matthias Futschik <mfutschik at ualg.pt>

Maintainer: Matthias Futschik <mfutschik at ualg.pt>

Citation (from within R, enter citation("OLIN")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("OLIN", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OLIN")

 

PDF R Script Introduction to OLIN
PDF   Reference Manual

Details

biocViews Microarray, Preprocessing, QualityControl, Software, TwoChannel, Visualization
Version 1.60.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 13.5 years)
License GPL-2
Depends R (>= 2.10), methods, locfit, marray
Imports graphics, grDevices, limma, marray, methods, stats
LinkingTo
Suggests convert
SystemRequirements
Enhances
URL http://olin.sysbiolab.eu
Depends On Me OLINgui
Imports Me OLINgui
Suggests Me maigesPack
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OLIN_1.60.0.tar.gz
Windows Binary OLIN_1.60.0.zip
Mac OS X 10.11 (El Capitan) OLIN_1.60.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/OLIN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OLIN
Package Short Url http://bioconductor.org/packages/OLIN/
Package Downloads Report Download Stats

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