OmaDB

DOI: 10.18129/B9.bioc.OmaDB    

R wrapper for the OMA REST API

Bioconductor version: Release (3.7)

A package for the orthology prediction data download from OMA database.

Author: Klara Kaleb

Maintainer: Klara Kaleb <klarakaleb at outlook.com>, Adrian Altenhoff <adrian.altenhoff at inf.ethz.ch>

Citation (from within R, enter citation("OmaDB")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OmaDB")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OmaDB")

 

HTML R Script Exploring Hierarchical orthologous groups with OmaDB
HTML R Script Exploring Taxonomic trees with OmaDB
HTML R Script Get started with OmaDB
HTML R Script Sequence Mapping with OmaDB
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, ComparativeGenomics, FunctionalGenomics, FunctionalPrediction, GO, Genetics, Software
Version 1.0.1
License GPL-2
Depends R (>= 3.5), httr (>= 1.2.1), plyr (>= 1.8.4)
Imports utils, ape, Biostrings, GenomicRanges, IRanges, methods, topGO
LinkingTo
Suggests knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OmaDB_1.0.1.tar.gz
Windows Binary OmaDB_1.0.1.zip
Mac OS X 10.11 (El Capitan) OmaDB_1.0.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/OmaDB
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OmaDB
Package Short Url http://bioconductor.org/packages/OmaDB/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive

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