To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OncoScore")

In most cases, you don't need to download the package archive at all.

OncoScore

 

A tool to identify potentially oncogenic genes

Bioconductor version: Release (3.5)

OncoScore is a tool to measure the association of genes to cancer based on citation frequencies in biomedical literature. The score is evaluated from PubMed literature by dynamically updatable web queries.

Author: Luca De Sano [aut], Carlo Gambacorti Passerini [ctb], Rocco Piazza [ctb], Daniele Ramazzotti [aut, cre], Roberta Spinelli [ctb]

Maintainer: Daniele Ramazzotti <daniele.ramazzotti at yahoo.com>

Citation (from within R, enter citation("OncoScore")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OncoScore")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OncoScore")

 

PDF R Script OncoScore
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews BiomedicalInformatics, Software
Version 1.4.0
In Bioconductor since BioC 3.3 (R-3.3) (1.5 years)
License GPL-3
Depends R (>= 3.4)
Imports biomaRt, grDevices, graphics, utils
LinkingTo
Suggests BiocGenerics, BiocStyle, testthat
SystemRequirements
Enhances
URL https://github.com/danro9685/OncoScore
BugReports https://github.com/danro9685/OncoScore
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source OncoScore_1.4.0.tar.gz
Windows Binary OncoScore_1.4.0.zip
Mac OS X 10.11 (El Capitan) OncoScore_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/OncoScore
Package Short Url http://bioconductor.org/packages/OncoScore/
Package Downloads Report Download Stats

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