OrderedList

Similarities of Ordered Gene Lists

Bioconductor version: Release (2.14)

Detection of similarities between ordered lists of genes. Thereby, either simple lists can be compared or gene expression data can be used to deduce the lists. Significance of similarities is evaluated by shuffling lists or by resampling in microarray data, respectively.

Author: Xinan Yang, Stefanie Scheid, Claudio Lottaz

Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("OrderedList")

Citation (from within R, enter citation("OrderedList")):

Documentation

PDF R Script Similarities of Ordered Gene Lists
PDF   Reference Manual

Details

biocViews DifferentialExpression, Microarray, MultipleComparison, Software
Version 1.36.0
In Bioconductor since BioC 1.8 (R-2.3)
License GPL (>= 2)
Depends R (>= 2.1.0), Biobase(>= 1.5.12), twilight(>= 1.9.2), methods
Imports Biobase, graphics, methods, stats, twilight
Suggests
System Requirements
URL http://compdiag.molgen.mpg.de/software/index.shtml
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Package Downloads

Package Source OrderedList_1.36.0.tar.gz
Windows Binary OrderedList_1.36.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) OrderedList_1.36.0.tgz
Mac OS X 10.9 (Mavericks) OrderedList_1.36.0.tgz
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