To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("QDNAseq")

In most cases, you don't need to download the package archive at all.

QDNAseq

Quantitative DNA sequencing for chromosomal aberrations

Bioconductor version: Release (3.0)

Quantitative DNA sequencing for chromosomal aberrations.

Author: Ilari Scheinin

Maintainer: Ilari Scheinin <ilari.scheinin at gmail.com>

Citation (from within R, enter citation("QDNAseq")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("QDNAseq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("QDNAseq")

 

PDF R Script Introduction to QDNAseq
PDF   Reference Manual
Text   NEWS

Details

biocViews CopyNumberVariation, DNASeq, Genetics, GenomeAnnotation, Preprocessing, QualityControl, Sequencing, Software
Version 1.2.0
In Bioconductor since BioC 2.14 (R-3.1)
License GPL
Depends R (>= 2.15.0)
Imports graphics, methods, stats, utils, matrixStats (>= 0.9.4), R.utils (>= 1.28.4), Biobase(>= 2.18.0), CGHbase(>= 1.18.0), CGHcall(>= 2.18.0), DNAcopy(>= 1.32.0), Rsamtools(>= 1.10.0)
Suggests R.cache (>= 0.9.0), digest, snowfall, BSgenome, GenomeInfoDb, GenomicRanges
System Requirements
URL https://github.com/ccagc/QDNAseq
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source QDNAseq_1.2.0.tar.gz
Windows Binary QDNAseq_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) QDNAseq_1.2.0.tgz
Mac OS X 10.9 (Mavericks) QDNAseq_1.2.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center