To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RSVSim")

In most cases, you don't need to download the package archive at all.

RSVSim

 

RSVSim: an R/Bioconductor package for the simulation of structural variations

Bioconductor version: Release (3.1)

RSVSim is a package for the simulation of deletions, insertions, inversion, tandem-duplications and translocations of various sizes in any genome available as FASTA-file or BSgenome data package. SV breakpoints can be placed uniformly accross the whole genome, with a bias towards repeat regions and regions of high homology (for hg19) or at user-supplied coordinates.

Author: Christoph Bartenhagen

Maintainer: Christoph Bartenhagen <christoph.bartenhagen at uni-muenster.de>

Citation (from within R, enter citation("RSVSim")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RSVSim")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RSVSim")

 

PDF R Script RSVSim: an R/Bioconductor package for the simulation of structural variations
PDF   Reference Manual

Details

biocViews Sequencing, Software
Version 1.8.0
In Bioconductor since BioC 2.12 (R-3.0) (2.5 years)
License LGPL-3
Depends R (>= 3.0.0), Biostrings, GenomicRanges
Imports methods, IRanges, ShortRead
LinkingTo
Suggests BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg19.masked, MASS, rtracklayer
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RSVSim_1.8.0.tar.gz
Windows Binary RSVSim_1.8.0.zip
Mac OS X 10.6 (Snow Leopard) RSVSim_1.8.0.tgz
Mac OS X 10.9 (Mavericks) RSVSim_1.8.0.tgz
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