To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RSVSim")

In most cases, you don't need to download the package archive at all.

RSVSim

RSVSim: an R/Bioconductor package for the simulation of structural variations

Bioconductor version: Release (2.14)

RSVSim is a package for the simulation of deletions, insertions, inversion, tandem-duplications and translocations of various sizes in any genome available as FASTA-file or BSgenome data package. SV breakpoints can be placed uniformly accross the whole genome, with a bias towards repeat regions and regions of high homology (for hg19) or at user-supplied coordinates.

Author: Christoph Bartenhagen

Maintainer: Christoph Bartenhagen <christoph.bartenhagen at uni-muenster.de>

Citation (from within R, enter citation("RSVSim")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RSVSim")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RSVSim")

 

PDF R Script RSVSim: an R/Bioconductor package for the simulation of structural variations
PDF   Reference Manual

Details

biocViews Sequencing, Software
Version 1.4.0
In Bioconductor since BioC 2.12 (R-3.0)
License LGPL-3
Depends R (>= 3.0.0), Biostrings, GenomicRanges
Imports methods, IRanges, ShortRead
Suggests BSgenome.Hsapiens.UCSC.hg19, MASS, rtracklayer
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RSVSim_1.4.0.tar.gz
Windows Binary RSVSim_1.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) RSVSim_1.4.0.tgz
Mac OS X 10.9 (Mavericks) RSVSim_1.4.0.tgz
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