To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RTNduals")

In most cases, you don't need to download the package archive at all.

RTNduals

DOI: 10.18129/B9.bioc.RTNduals    

Analysis of co-regulatory network motifs and inference of 'dual regulons'

Bioconductor version: Release (3.5)

RTNduals is a tool that searches for possible co-regulatory loops between regulon pairs generated by the RTN package. It compares the shared targets in order to infer 'dual regulons', a new concept that tests whether regulon pairs agree on the predicted downstream effects.

Author: Vinicius S. Chagas, Clarice S. Groeneveld, Gordon Robertson, Kerstin B. Meyer, Mauro A. A. Castro

Maintainer: Vinicius Chagas <vinicius.chagas at ufpr.br>, Mauro Castro <mauro.castro at ufpr.br>, Clarice Groeneveld <clari.groeneveld at gmail.com>

Citation (from within R, enter citation("RTNduals")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RTNduals")

Documentation

HTML R Script RTNduals: An R/Bioconductor package for analysis of co-regulatory network motifs and inference of 'dual regulons'.
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneExpression, GeneRegulation, GeneSetEnrichment, GeneticVariability, GraphAndNetwork, NetworkEnrichment, NetworkInference, Software
Version 1.0.3
In Bioconductor since BioC 3.5 (R-3.4) (< 6 months)
License Artistic-2.0
Depends R (>= 3.4), methods, RTN
Imports graphics, grDevices, stats, utils
LinkingTo
Suggests knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RTNduals_1.0.3.tar.gz
Windows Binary RTNduals_1.0.3.zip
Mac OS X 10.11 (El Capitan) RTNduals_1.0.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/RTNduals
Package Short Url http://bioconductor.org/packages/RTNduals/
Package Downloads Report Download Stats

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