Bioconductor Developer Survey 2026 Now Open!

RTopper

This is the released version of RTopper; for the devel version, see RTopper.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9

This package is designed to perform Gene Set Analysis across multiple genomic platforms


Bioconductor version: Release (3.23)

the RTopper package is designed to perform and integrate gene set enrichment results across multiple genomic platforms.

Author: Luigi Marchionni <marchion at jhu.edu>, Svitlana Tyekucheva <svitlana at jimmy.harvard.edu>

Maintainer: Luigi Marchionni <marchion at jhu.edu>

Citation (from within R, enter citation("RTopper")):

Luigi Marchionni, Svitlana Tyekucheva. RTopper: This package is designed to perform Gene Set Analysis across multiple genomic platforms. doi:10.18129/B9.bioc.RTopper, R package version 1.58.0, https://bioconductor.org/packages/RTopper.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RTopper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTopper")
RTopper user's manual PDF R Script
Reference ManualPDF
LICENSEText

Details

biocViews Microarray, Software
Version1.58.0
In Bioconductor sinceBioC 2.9 (R-2.14) (15 years)
License GPL (>= 3) + file LICENSE
Depends R (>= 2.12.0), Biobase
Imports limma, multtest
System Requirements
URL
See More
Suggests org.Hs.eg.db, KEGGREST, GO.db
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RTopper_1.58.0.tar.gz
Windows Binary (x86_64) RTopper_1.58.0.zip
macOS Binary (big-sur-x86_64) RTopper_1.58.0.tgz
macOS Binary (sonoma-arm64) RTopper_1.58.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/RTopper
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/RTopper
Package Short Url https://bioconductor.org/packages/RTopper/
Package Downloads ReportDownload Stats