To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RaggedExperiment")

In most cases, you don't need to download the package archive at all.

RaggedExperiment

 

Representation of Sparse Experiments and Assays Across Samples

Bioconductor version: Release (3.5)

This package provides a flexible representation of copy number, mutation, and other data that fit into the ragged array schema for genomic location data. The basic representation of such data provides a rectangular flat table interface to the user with range information in the rows and samples/specimen in the columns.

Author: Martin Morgan [aut, cre], Marcel Ramos [aut]

Maintainer: Martin Morgan <martin.morgan at roswellpark.org>

Citation (from within R, enter citation("RaggedExperiment")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RaggedExperiment")

Documentation

HTML R Script RaggedExperiment
PDF   Reference Manual
Text   NEWS

Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.0.0
In Bioconductor since BioC 3.5 (R-3.4) (< 6 months)
License Artistic-2.0
Depends R (>= 3.4.0), GenomicRanges
Imports BiocGenerics, IRanges, methods, S4Vectors, stats, SummarizedExperiment
LinkingTo
Suggests knitr, testthat, MultiAssayExperiment
SystemRequirements
Enhances
URL
BugReports https://github.com/Bioconductor/RaggedExperiment/issues
Depends On Me
Imports Me
Suggests Me MultiAssayExperiment
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RaggedExperiment_1.0.0.tar.gz
Windows Binary RaggedExperiment_1.0.0.zip
Mac OS X 10.11 (El Capitan) RaggedExperiment_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RaggedExperiment
Package Short Url http://bioconductor.org/packages/RaggedExperiment/
Package Downloads Report Download Stats

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