To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ReactomePA")

In most cases, you don't need to download the package archive at all.

ReactomePA

Reactome Pathway Analysis

Bioconductor version: Release (2.14)

This package provides functions for pathway analysis based on REACTOME pathway database. It will implement enrichment analysis, gene set enrichment analysis and functional modules detection.

Author: Guangchuang Yu <guangchuangyu at gmail.com>

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("ReactomePA")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ReactomePA")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ReactomePA")

 

PDF R Script ReactomePA - an R package for Reactome Pathway Analysis
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Pathways, Software, Visualization
Version 1.8.1
In Bioconductor since BioC 2.10 (R-2.15)
License GPL-2
Depends
Imports AnnotationDbi, reactome.db, org.Hs.eg.db, DOSE, igraph, graphite
Suggests clusterProfiler, GOSemSim, ChIPseeker, knitr
System Requirements
URL
Depends On Me
Imports Me
Suggests Me ChIPseeker, clusterProfiler, DOSE

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ReactomePA_1.8.1.tar.gz
Windows Binary ReactomePA_1.8.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ReactomePA_1.8.1.tgz
Mac OS X 10.9 (Mavericks) ReactomePA_1.8.1.tgz
Browse/checkout source (username/password: readonly)
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