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Rhisat2

This is the released version of Rhisat2; for the devel version, see Rhisat2.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9

R Wrapper for HISAT2 Aligner

DOI: 10.18129/B9.bioc.Rhisat2

Bioconductor version: Release (3.23)

An R interface to the HISAT2 spliced short-read aligner by Kim et al. (2015). The package contains wrapper functions to create a genome index and to perform the read alignment to the generated index.

Author: Charlotte Soneson [aut, cre] ORCID: 0000-0003-3833-2169

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("Rhisat2")):

Charlotte Soneson. Rhisat2: R Wrapper for HISAT2 Aligner. doi:10.18129/B9.bioc.Rhisat2, R package version 1.28.1, https://bioconductor.org/packages/Rhisat2.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rhisat2")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rhisat2")

Details

Package Archives

Follow Installation instructions to use this package in your R session.