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Spatial Analysis of Network Associations

Bioconductor version: Release (3.0)

This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network (Knet). Vertices can also be individually ranked by their strength of association with high-weight vertices (Knode).

Author: Alex J. Cornish and Florian Markowetz

Maintainer: Alex J. Cornish <a.cornish12 at>

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HTML R Script Introduction to SANTA
PDF   Reference Manual
Text   NEWS


biocViews Clustering, Network, NetworkEnrichment, Software
Version 2.2.0
In Bioconductor since BioC 2.12 (R-3.0)
License GPL (>= 2)
Depends R (>= 2.14), igraph
Imports Matrix, snow, stringr
Suggests RUnit, BiocGenerics, knitr, knitcitations, formatR, org.Sc.sgd.db, BioNet, DLBCL, msm
Depends On Me
Imports Me
Suggests Me

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Package Source SANTA_2.2.0.tar.gz
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Mac OS X 10.6 (Snow Leopard) SANTA_2.2.0.tgz
Mac OS X 10.9 (Mavericks) SANTA_2.2.0.tgz
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