SEtools

DOI: 10.18129/B9.bioc.SEtools    

SEtools: tools for working with SummarizedExperiment

Bioconductor version: Release (3.10)

This includes a set of tools for working with the SummarizedExperiment class, including handy merging and plotting functions.

Author: Pierre-Luc Germain [cre, aut]

Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>

Citation (from within R, enter citation("SEtools")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SEtools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SEtools")

 

HTML R Script SEtools
PDF   Reference Manual

Details

biocViews DataRepresentation, Software, Visualization
Version 1.0.0
In Bioconductor since BioC 3.10 (R-3.6) (< 6 months)
License GPL
Depends R (>= 3.6)
Imports SummarizedExperiment, data.table, pheatmap, seriation, ComplexHeatmap, circlize, methods
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, ggplot2
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SEtools_1.0.0.tar.gz
Windows Binary SEtools_1.0.0.zip
Mac OS X 10.11 (El Capitan) SEtools_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SEtools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SEtools
Package Short Url https://bioconductor.org/packages/SEtools/
Package Downloads Report Download Stats

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