SMAD

DOI: 10.18129/B9.bioc.SMAD    

Statistical Modelling of AP-MS Data (SMAD)

Bioconductor version: Release (3.10)

Assigning probability scores to prey proteins captured in affinity purification mass spectrometry (AP-MS) expriments to infer protein- protein interactions. The output would facilitate non-specific background removal as contaminants are commonly found in AP-MS data.

Author: Qingzhou Zhang [aut, cre]

Maintainer: Qingzhou Zhang <zqzneptune at hotmail.com>

Citation (from within R, enter citation("SMAD")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SMAD")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SMAD")

 

HTML R Script SMAD Quick Start
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews MassSpectrometry, Proteomics, Software
Version 1.2.0
In Bioconductor since BioC 3.9 (R-3.6) (0.5 years)
License MIT + file LICENSE
Depends R (>= 3.6.0)
Imports magrittr (>= 1.5), matrixStats, dplyr, stats, tidyr, utils, Rcpp (>= 1.0.0)
LinkingTo Rcpp
Suggests knitr, rmarkdown, testthat, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SMAD_1.2.0.tar.gz
Windows Binary SMAD_1.2.0.zip
Mac OS X 10.11 (El Capitan) SMAD_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SMAD
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SMAD
Package Short Url https://bioconductor.org/packages/SMAD/
Package Downloads Report Download Stats

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