To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("STRINGdb")

In most cases, you don't need to download the package archive at all.

STRINGdb

 

STRINGdb (Search Tool for the Retrieval of Interacting proteins database)

Bioconductor version: Release (3.1)

The STRINGdb package provides a user-friendly interface to the STRING protein-protein interactions database ( http://www.string-db.org ).

Author: Andrea Franceschini <andrea.franceschini at isb-sib.ch>

Maintainer: Andrea Franceschini <andrea.franceschini at isb-sib.ch>

Citation (from within R, enter citation("STRINGdb")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("STRINGdb")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("STRINGdb")

 

PDF R Script STRINGdb Vignette
PDF   Reference Manual

Details

biocViews Network, Software
Version 1.8.1
In Bioconductor since BioC 2.13 (R-3.0) (1.5 years)
License GPL-2
Depends R (>= 2.14.0), png, sqldf, plyr, igraph, RCurl, plotrix, methods, RColorBrewer, gplots, hash
Imports
LinkingTo
Suggests RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me scsR
Imports Me pwOmics
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source STRINGdb_1.8.1.tar.gz
Windows Binary STRINGdb_1.8.1.zip
Mac OS X 10.6 (Snow Leopard) STRINGdb_1.8.1.tgz
Mac OS X 10.9 (Mavericks) STRINGdb_1.8.1.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center