STRINGdb

This is the released version of STRINGdb; for the devel version, see STRINGdb.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13

STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment Analysis

Bioconductor version: Release (3.23)

The STRINGdb package provides an R interface to STRING, a protein-protein interaction database and functional enrichment analysis tool (https://string-db.org).

Author: Andrea Franceschini <andrea.franceschini at isb-sib.ch>

Maintainer: Damian Szklarczyk <damian.szklarczyk at imls.uzh.ch>

Citation (from within R, enter citation("STRINGdb")):

Andrea Franceschini. STRINGdb: STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment Analysis. doi:10.18129/B9.bioc.STRINGdb, R package version 2.24.1, https://bioconductor.org/packages/STRINGdb.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("STRINGdb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("STRINGdb")

STRINGdb Vignette	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Network, Software
Version	2.24.1
In Bioconductor since	BioC 2.13 (R-3.0) (13 years)
License	GPL-2
Depends	R (>= 2.14.0)
Imports	png, sqldf, plyr, igraph, httr, methods, RColorBrewer, gplots, hash, plotrix
System Requirements
URL

Suggests	RUnit, BiocGenerics
Linking To
Enhances
Depends On Me	PPInfer
Imports Me	DeSciDe, GeDi, IMMAN, netZooR, RITAN, XINA
Suggests Me	epiNEM, GeneNetworkBuilder, martini, netSmooth, PCAN, protti, scGraphVerse, TDbasedUFEadv
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	STRINGdb_2.24.1.tar.gz
Windows Binary (x86_64)	STRINGdb_2.24.1.zip
macOS Binary (big-sur-x86_64)	STRINGdb_2.24.1.tgz
macOS Binary (sonoma-arm64)	STRINGdb_2.24.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/STRINGdb
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/STRINGdb
Package Short Url	https://bioconductor.org/packages/STRINGdb/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.23	Source Archive