To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SemDist")

In most cases, you don't need to download the package archive at all.

SemDist

DOI: 10.18129/B9.bioc.SemDist    

Information Accretion-based Function Predictor Evaluation

Bioconductor version: Release (3.5)

This package implements methods to calculate information accretion for a given version of the gene ontology and uses this data to calculate remaining uncertainty, misinformation, and semantic similarity for given sets of predicted annotations and true annotations from a protein function predictor.

Author: Ian Gonzalez and Wyatt Clark

Maintainer: Ian Gonzalez <gonzalez.isv at gmail.com>

Citation (from within R, enter citation("SemDist")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SemDist")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SemDist")

 

PDF R Script introduction.pdf
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Classification, GO, Software
Version 1.10.0
In Bioconductor since BioC 3.0 (R-3.1) (3 years)
License GPL (>= 2)
Depends R (>= 3.1), AnnotationDbi, GO.db, annotate
Imports
LinkingTo
Suggests GOSemSim
SystemRequirements
Enhances
URL http://github.com/iangonzalez/SemDist
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source SemDist_1.10.0.tar.gz
Windows Binary SemDist_1.10.0.zip
Mac OS X 10.11 (El Capitan) SemDist_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SemDist
Package Short Url http://bioconductor.org/packages/SemDist/
Package Downloads Report Download Stats

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