To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SigFuge")

In most cases, you don't need to download the package archive at all.

SigFuge

SigFuge

Bioconductor version: Release (2.14)

Algorithm for testing significance of clustering in RNA-seq data.

Author: Patrick Kimes, Christopher Cabanski

Maintainer: Patrick Kimes <pkimes at live.unc.edu>

Citation (from within R, enter citation("SigFuge")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SigFuge")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SigFuge")

 

PDF R Script SigFuge Tutorial
PDF   Reference Manual

Details

biocViews Clustering, RNASeq, Software, Visualization
Version 1.2.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends R (>= 3.0.2), GenomicRanges
Imports ggplot2, matlab, reshape, sigclust
Suggests org.Hs.eg.db, prebsdata, Rsamtools, TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source SigFuge_1.2.0.tar.gz
Windows Binary SigFuge_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) SigFuge_1.2.0.tgz
Mac OS X 10.9 (Mavericks) SigFuge_1.2.0.tgz
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