To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SigFuge")

In most cases, you don't need to download the package archive at all.

SigFuge

SigFuge

Bioconductor version: Release (3.0)

Algorithm for testing significance of clustering in RNA-seq data.

Author: Patrick Kimes, Christopher Cabanski

Maintainer: Patrick Kimes <patrick.kimes at gmail.com>

Citation (from within R, enter citation("SigFuge")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SigFuge")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SigFuge")

 

PDF R Script SigFuge Tutorial
PDF   Reference Manual

Details

biocViews Clustering, RNASeq, Software, Visualization
Version 1.4.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends R (>= 3.1.1), GenomicRanges
Imports ggplot2, matlab, reshape, sigclust
Suggests org.Hs.eg.db, prebsdata, Rsamtools(>= 1.17.0), TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source SigFuge_1.4.0.tar.gz
Windows Binary SigFuge_1.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) SigFuge_1.4.0.tgz
Mac OS X 10.9 (Mavericks) SigFuge_1.4.0.tgz
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