To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TSCAN")

In most cases, you don't need to download the package archive at all.

TSCAN

DOI: 10.18129/B9.bioc.TSCAN    

TSCAN: Tools for Single-Cell ANalysis

Bioconductor version: Release (3.6)

TSCAN enables users to easily construct and tune pseudotemporal cell ordering as well as analyzing differentially expressed genes. TSCAN comes with a user-friendly GUI written in shiny. More features will come in the future.

Author: Zhicheng Ji, Hongkai Ji

Maintainer: Zhicheng Ji <zji4 at jhu.edu>

Citation (from within R, enter citation("TSCAN")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TSCAN")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TSCAN")

 

PDF R Script TSCAN: Tools for Single-Cell ANalysis
PDF   Reference Manual

Details

biocViews GUI, GeneExpression, Software, Visualization
Version 1.16.0
In Bioconductor since BioC 3.0 (R-3.1) (3 years)
License GPL(>=2)
Depends R (>= 2.10.0)
Imports ggplot2, shiny, plyr, grid, fastICA, igraph, combinat, mgcv, mclust, gplots
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TSCAN_1.16.0.tar.gz
Windows Binary TSCAN_1.16.0.zip
Mac OS X 10.11 (El Capitan) TSCAN_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TSCAN
Package Short Url http://bioconductor.org/packages/TSCAN/
Package Downloads Report Download Stats

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