XDE

XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression

Bioconductor version: Release (2.14)

Multi-level model for cross-study detection of differential gene expression.

Author: R.B. Scharpf, G. Parmigiani, A.B. Nobel, and H. Tjelmeland

Maintainer: Robert Scharpf <rscharpf at jhsph.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("XDE")

To cite this package in a publication, start R and enter:

    citation("XDE")

Documentation

PDF R Script XDE Vignette
PDF R Script XdeParameterClass Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, Microarray, Software
Version 2.10.0
In Bioconductor since BioC 2.2 (R-2.7)
License LGPL-2
Depends R (>= 2.10.0), Biobase(>= 2.5.5), methods, graphics
Imports Biobase, BiocGenerics, genefilter, graphics, grDevices, gtools, MergeMaid, methods, stats, utils, mvtnorm
Suggests siggenes, genefilter, MASS, RColorBrewer, GeneMeta, RUnit
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source XDE_2.10.0.tar.gz
Windows Binary XDE_2.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) XDE_2.10.0.tgz
Mac OS X 10.9 (Mavericks)
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