To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("XDE")

In most cases, you don't need to download the package archive at all.

XDE

XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression

Bioconductor version: Release (2.14)

Multi-level model for cross-study detection of differential gene expression.

Author: R.B. Scharpf, G. Parmigiani, A.B. Nobel, and H. Tjelmeland

Maintainer: Robert Scharpf <rscharpf at jhsph.edu>

Citation (from within R, enter citation("XDE")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("XDE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("XDE")

 

PDF R Script XDE Vignette
PDF R Script XdeParameterClass Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, Microarray, Software
Version 2.10.0
In Bioconductor since BioC 2.2 (R-2.7)
License LGPL-2
Depends R (>= 2.10.0), Biobase(>= 2.5.5), methods, graphics
Imports Biobase, BiocGenerics, genefilter, graphics, grDevices, gtools, MergeMaid, methods, stats, utils, mvtnorm
Suggests siggenes, genefilter, MASS, RColorBrewer, GeneMeta, RUnit
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source XDE_2.10.0.tar.gz
Windows Binary XDE_2.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) XDE_2.10.0.tgz
Mac OS X 10.9 (Mavericks) XDE_2.10.0.tgz
Browse/checkout source (username/password: readonly)
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