affyio

DOI: 10.18129/B9.bioc.affyio    

Tools for parsing Affymetrix data files

Bioconductor version: Release (3.8)

Routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats.

Author: Ben Bolstad <bmb at bmbolstad.com>

Maintainer: Ben Bolstad <bmb at bmbolstad.com>

Citation (from within R, enter citation("affyio")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("affyio", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews DataImport, Infrastructure, Microarray, Software
Version 1.52.0
In Bioconductor since BioC 1.8 (R-2.3) (12.5 years)
License LGPL (>= 2)
Depends R (>= 2.6.0)
Imports zlibbioc, methods
LinkingTo
Suggests
SystemRequirements
Enhances
URL https://github.com/bmbolstad/affyio
Depends On Me affyPara, makecdfenv, SCAN.UPC, sscore
Imports Me affy, affylmGUI, crlmm, ExiMiR, gcrma, oligo, oligoClasses, puma
Suggests Me BufferedMatrixMethods
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affyio_1.52.0.tar.gz
Windows Binary affyio_1.52.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) affyio_1.52.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/affyio
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/affyio
Package Short Url http://bioconductor.org/packages/affyio/
Package Downloads Report Download Stats

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