aroma.light

Light-weight methods for normalization and visualization of microarray data using only basic R data types

Bioconductor version: Release (2.14)

Methods for microarray analysis that take basic data types such as matrices and lists of vectors. These methods can be used standalone, be utilized in other packages, or be wrapped up in higher-level classes.

Author: Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [ctb]

Maintainer: Henrik Bengtsson <henrikb at braju.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("aroma.light")

To cite this package in a publication, start R and enter:

    citation("aroma.light")

Documentation

PDF   Reference Manual
Text   NEWS

Details

biocViews Infrastructure, Microarray, MultiChannel, OneChannel, Preprocessing, Software, TwoChannel, Visualization
Version 2.0.0
In Bioconductor since BioC 1.9 (R-2.4)
License GPL (>= 2)
Depends R (>= 2.14.0), matrixStats (>= 0.8.14)
Imports R.methodsS3 (>= 1.6.1), R.oo (>= 1.18.0)
Suggests R.utils (>= 1.29.8), princurve (>= 1.1-12)
System Requirements
URL http://www.aroma-project.org/
Depends On Me EDASeq
Imports Me
Suggests Me

Package Downloads

Package Source aroma.light_2.0.0.tar.gz
Windows Binary aroma.light_2.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) aroma.light_2.0.0.tgz
Mac OS X 10.9 (Mavericks)
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