To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ballgown")

In most cases, you don't need to download the package archive at all.

ballgown

 

   

Flexible, isoform-level differential expression analysis

Bioconductor version: Release (3.3)

Tools for statistical analysis of assembled transcriptomes, including flexible differential expression analysis, visualization of transcript structures, and matching of assembled transcripts to annotation.

Author: Jack Fu [aut], Alyssa C. Frazee [aut, cre], Leonardo Collado-Torres [aut], Andrew E. Jaffe [aut], Jeffrey T. Leek [aut, ths]

Maintainer: Jack Fu <jmfu at jhsph.edu>

Citation (from within R, enter citation("ballgown")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ballgown")

Documentation

HTML R Script Flexible isoform-level differential expression analysis with Ballgown
PDF   Reference Manual

Details

biocViews DifferentialExpression, Preprocessing, RNASeq, Software, StatisticalMethod
Version 2.4.2
In Bioconductor since BioC 3.0 (R-3.1) (2 years)
License Artistic-2.0
Depends R (>= 3.1.1), methods
Imports GenomicRanges(>= 1.17.25), IRanges(>= 1.99.22), S4Vectors(>= 0.9.39), RColorBrewer, splines, sva, limma, rtracklayer(>= 1.29.25), Biobase(>= 2.25.0), GenomeInfoDb
LinkingTo
Suggests testthat, knitr
SystemRequirements
Enhances
URL
BugReports https://github.com/alyssafrazee/ballgown/issues
Depends On Me
Imports Me
Suggests Me polyester
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ballgown_2.4.2.tar.gz
Windows Binary ballgown_2.4.2.zip
Mac OS X 10.9 (Mavericks) ballgown_2.4.2.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ballgown/tree/release-3.3
Package Short Url http://bioconductor.org/packages/ballgown/
Package Downloads Report Download Stats

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