biodbChebi
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.23 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see biodbChebi.
biodbChebi, a library for connecting to the ChEBI Database
Bioconductor version: Release (3.23)
The biodbChebi library provides access to the ChEBI Database, using biodb package framework. It allows to retrieve entries by their accession number. Web services can be accessed for searching the database by name, mass or other fields.
Author: Pierrick Roger [aut, cre] 
Maintainer: Pierrick Roger <pierrick.roger at cea.fr>
citation("biodbChebi")):Pierrick Roger. biodbChebi: biodbChebi, a library for connecting to the ChEBI Database. doi:10.18129/B9.bioc.biodbChebi, R package version 1.18.0, https://bioconductor.org/packages/biodbChebi.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("biodbChebi")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| No vignettes available | |
| Reference Manual |
Details
| biocViews | DataImport, Infrastructure, Software |
| Version | 1.18.0 |
| In Bioconductor since | BioC 3.14 (R-4.1) (5 years) |
| License | AGPL-3 |
| Depends | R (>= 4.1) |
| Imports | R6, biodb (>= 1.3.1) |
| System Requirements | |
| URL | https://github.com/pkrog/biodbChebi |
| Bug Reports | https://github.com/pkrog/biodbChebi/issues |
See More
| Suggests | BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, lgr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | phenomis |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | biodbChebi_1.17.0.tgz |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/biodbChebi |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/biodbChebi |
| Package Short Url | https://bioconductor.org/packages/biodbChebi/ |
| Package Downloads Report | Download Stats |