breakpointR

DOI: 10.18129/B9.bioc.breakpointR    

Find breakpoints in Strand-seq data

Bioconductor version: Release (3.8)

This package implements functions for finding breakpoints, plotting and export of Strand-seq data.

Author: David Porubsky, Ashley Sanders, Aaron Taudt

Maintainer: David Porubsky <david.porubsky at gmail.com>

Citation (from within R, enter citation("breakpointR")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("breakpointR", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("breakpointR")

 

PDF R Script How to use breakpointR
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Coverage, DNASeq, Sequencing, SingleCell, Software
Version 1.0.0
License file LICENSE
Depends R (>= 3.5), GenomicRanges, cowplot, breakpointRdata
Imports methods, utils, grDevices, stats, S4Vectors, GenomeInfoDb(>= 1.12.3), IRanges, Rsamtools, GenomicAlignments, ggplot2, BiocGenerics, gtools, doParallel, foreach
LinkingTo
Suggests knitr, BiocStyle, testthat
SystemRequirements
Enhances
URL https://github.com/daewoooo/BreakPointR
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package breakpointR_1.0.0.tar.gz
Windows Binary breakpointR_1.0.0.zip
Mac OS X 10.11 (El Capitan) breakpointR_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/breakpointR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/breakpointR
Package Short Url http://bioconductor.org/packages/breakpointR/
Package Downloads Report Download Stats

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