statistical analysis and visulization of functional profiles for genes and gene clusters

Bioconductor version: Release (2.14)

The package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu, Li-Gen Wang

Maintainer: Guangchuang Yu <guangchuangyu at>

To install this package, start R and enter:


Citation (from within R, enter citation("clusterProfiler")):


PDF R Script An introduction to clusterProfiler
PDF   Reference Manual
Text   NEWS


biocViews Clustering, GO, GeneSetEnrichment, MultipleComparison, Pathways, Software, Visualization
Version 1.12.0
In Bioconductor since BioC 2.8 (R-2.13)
License Artistic-2.0
Depends R (>= 2.10), ggplot2
Imports methods, stats4, plyr, AnnotationDbi, GO.db, KEGG.db, DOSE, GOSemSim
Suggests, ReactomePA, pathview, knitr
System Requirements
Depends On Me
Imports Me
Suggests Me ChIPseeker, DOSE, GOSemSim, ReactomePA

Package Downloads

Package Source clusterProfiler_1.12.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) clusterProfiler_1.12.0.tgz
Mac OS X 10.9 (Mavericks) clusterProfiler_1.12.0.tgz
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