To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

In most cases, you don't need to download the package archive at all.

clusterProfiler

statistical analysis and visulization of functional profiles for genes and gene clusters

Bioconductor version: Release (3.0)

This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu, Li-Gen Wang

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("clusterProfiler")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clusterProfiler")

 

PDF R Script An introduction to clusterProfiler
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, GO, GeneSetEnrichment, MultipleComparison, Pathways, Software, Visualization
Version 2.0.0
In Bioconductor since BioC 2.8 (R-2.13)
License Artistic-2.0
Depends R (>= 3.0.0)
Imports methods, stats4, plyr, ggplot2, AnnotationDbi, GO.db, KEGG.db, DOSE, GOSemSim
Suggests org.Hs.eg.db, ReactomePA, pathview, knitr
System Requirements
URL https://github.com/GuangchuangYu/clusterProfiler
Depends On Me
Imports Me
Suggests Me ChIPseeker, DOSE, GOSemSim, ReactomePA

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source clusterProfiler_2.0.0.tar.gz
Windows Binary clusterProfiler_2.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) clusterProfiler_2.0.0.tgz
Mac OS X 10.9 (Mavericks) clusterProfiler_2.0.0.tgz
Browse/checkout source (username/password: readonly)
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