To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

In most cases, you don't need to download the package archive at all.

clusterProfiler

 

statistical analysis and visulization of functional profiles for genes and gene clusters

Bioconductor version: Release (3.1)

This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu <guangchuangyu at gmail.com> with contributions from Li-Gen Wang and Giovanni Dall'Olio.

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("clusterProfiler")):

Installation

To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clusterProfiler")

 

PDF R Script An introduction to clusterProfiler
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, GO, GeneSetEnrichment, MultipleComparison, Pathways, Software, Visualization
Version 2.2.4
In Bioconductor since BioC 2.8 (R-2.13) (4.5 years)
License Artistic-2.0
Depends R (>= 3.1.0)
Imports DOSE, GOSemSim, AnnotationDbi, methods, stats4, plyr, ggplot2, GO.db, KEGGREST, magrittr, qvalue
LinkingTo
Suggests org.Hs.eg.db, ReactomePA, pathview, KEGG.db, RDAVIDWebService, knitr, BiocStyle
SystemRequirements
Enhances
URL https://github.com/GuangchuangYu/clusterProfiler
BugReports https://github.com/GuangchuangYu/clusterProfiler/issues
Depends On Me
Imports Me
Suggests Me ChIPseeker, DOSE, GOSemSim, ReactomePA
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source clusterProfiler_2.2.4.tar.gz
Windows Binary clusterProfiler_2.2.4.zip
Mac OS X 10.6 (Snow Leopard) clusterProfiler_2.2.4.tgz
Mac OS X 10.9 (Mavericks) clusterProfiler_2.2.4.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/clusterProfiler/tree/release-3.1
Package Short Url http://bioconductor.org/packages/clusterProfiler/
Package Downloads Report Download Stats

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