To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

In most cases, you don't need to download the package archive at all.

clusterProfiler

 

statistical analysis and visulization of functional profiles for genes and gene clusters

Bioconductor version: Release (3.2)

This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu <guangchuangyu at gmail.com> with contributions from Li-Gen Wang and Giovanni Dall'Olio.

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("clusterProfiler")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clusterProfiler")

 

HTML Statistical analysis and visualization of functional profiles for gene and gene clusters
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Clustering, GO, GeneSetEnrichment, KEGG, MultipleComparison, Pathways, Reactome, Software, Visualization
Version 2.4.3
In Bioconductor since BioC 2.8 (R-2.13) (5 years)
License Artistic-2.0
Depends R (>= 3.1.0)
Imports DOSE, GOSemSim, AnnotationDbi, methods, stats4, plyr, ggplot2, GO.db, KEGGREST, magrittr, qvalue, topGO
LinkingTo
Suggests BiocStyle, KEGG.db, knitr, org.Hs.eg.db, pathview, ReactomePA, RDAVIDWebService
SystemRequirements
Enhances
URL https://github.com/GuangchuangYu/clusterProfiler
BugReports https://github.com/GuangchuangYu/clusterProfiler/issues
Depends On Me
Imports Me
Suggests Me ChIPseeker, DOSE, GOSemSim, ReactomePA
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source clusterProfiler_2.4.3.tar.gz
Windows Binary clusterProfiler_2.4.3.zip
Mac OS X 10.6 (Snow Leopard) clusterProfiler_2.4.1.tgz
Mac OS X 10.9 (Mavericks) clusterProfiler_2.4.3.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/clusterProfiler/tree/release-3.2
Package Short Url http://bioconductor.org/packages/clusterProfiler/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center