conumee

DOI: 10.18129/B9.bioc.conumee    

Enhanced copy-number variation analysis using Illumina DNA methylation arrays

Bioconductor version: Release (3.7)

This package contains a set of processing and plotting methods for performing copy-number variation (CNV) analysis using Illumina 450k or EPIC methylation arrays.

Author: Volker Hovestadt, Marc Zapatka

Maintainer: Volker Hovestadt <conumee at hovestadt.bio>

Citation (from within R, enter citation("conumee")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("conumee")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("conumee")

 

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Details

biocViews CopyNumberVariation, DNAMethylation, MethylationArray, Microarray, Normalization, Preprocessing, QualityControl, Software
Version 1.14.0
In Bioconductor since BioC 3.1 (R-3.2) (3 years)
License GPL (>= 2)
Depends R (>= 3.0), minfi, IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, IlluminaHumanMethylationEPICmanifest
Imports methods, stats, DNAcopy, rtracklayer, GenomicRanges, IRanges, GenomeInfoDb
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, minfiData, RCurl
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package conumee_1.14.0.tar.gz
Windows Binary conumee_1.13.0.zip
Mac OS X 10.11 (El Capitan) conumee_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/conumee
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/conumee
Package Short Url http://bioconductor.org/packages/conumee/
Package Downloads Report Download Stats

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