To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("eiR")

In most cases, you don't need to download the package archive at all.

eiR

 

Accelerated similarity searching of small molecules

Bioconductor version: Release (3.1)

The eiR package provides utilities for accelerated structure similarity searching of very large small molecule data sets using an embedding and indexing approach.

Author: Kevin Horan

Maintainer: Thomas Girke <thomas.girke at ucr.edu>

Citation (from within R, enter citation("eiR")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("eiR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("eiR")

 

HTML R Script eiR
PDF   Reference Manual
Text   README
Text   NEWS
Text   LICENSE

Details

biocViews BiomedicalInformatics, CellBasedAssays, Cheminformatics, Clustering, DataImport, Infrastructure, MicrotitrePlateAssay, Pharmacogenetics, Pharmacogenomics, Proteomics, Software, Visualization
Version 1.8.2
In Bioconductor since BioC 2.12 (R-3.0) (2.5 years)
License Artistic-2.0
Depends R (>= 2.10.0), ChemmineR(>= 2.15.15), methods, DBI
Imports snow, tools, snowfall, RUnit, methods, ChemmineR, RCurl, digest, BiocGenerics
LinkingTo BH
Suggests RCurl, snow, BiocStyle, knitcitations, knitr, knitrBootstrap
SystemRequirements GSL (>=1.14) http://www.gnu.org/software/gsl/
Enhances
URL https://github.com/girke-lab/ChemmineR
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source eiR_1.8.2.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard) eiR_1.8.2.tgz
Mac OS X 10.9 (Mavericks) eiR_1.8.2.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/eiR/tree/release-3.1
Package Short Url http://bioconductor.org/packages/eiR/
Package Downloads Report Download Stats

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