fastLiquidAssociation

functions for genome-wide application of Liquid Association

Bioconductor version: Release (2.14)

This package extends the function of the LiquidAssociation package for genome-wide application. It integrates a screening method into the LA analysis to reduce the number of triplets to be examined for a high LA value and provides code for use in subsequent significance analyses.

Author: Tina Gunderson

Maintainer: Tina Gunderson <gunde207 at umn.edu>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("fastLiquidAssociation")

Citation (from within R, enter citation("fastLiquidAssociation")):

Documentation

PDF fastLiquidAssociation Vignette
PDF   Reference Manual

Details

biocViews Bioinformatics, Software
Version 1.0.0
In Bioconductor since BioC 2.14 (R-3.1)
License GPL-2
Depends methods, WGCNA, LiquidAssociation, parallel, stats
Imports
Suggests GOstats, yeastCC, org.Sc.sgd.db
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source fastLiquidAssociation_1.0.0.tar.gz
Windows Binary fastLiquidAssociation_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) fastLiquidAssociation_1.0.0.tgz
Mac OS X 10.9 (Mavericks) fastLiquidAssociation_1.0.0.tgz
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