To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("fdrame")

In most cases, you don't need to download the package archive at all.

fdrame

 

FDR adjustments of Microarray Experiments (FDR-AME)

Bioconductor version: Release (3.1)

This package contains two main functions. The first is fdr.ma which takes normalized expression data array, experimental design and computes adjusted p-values It returns the fdr adjusted p-values and plots, according to the methods described in (Reiner, Yekutieli and Benjamini 2002). The second, is fdr.gui() which creates a simple graphic user interface to access fdr.ma

Author: Yoav Benjamini, Effi Kenigsberg, Anat Reiner, Daniel Yekutieli

Maintainer: Effi Kenigsberg <effiken.fdrame at gmail.com>

Citation (from within R, enter citation("fdrame")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("fdrame")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fdrame")

 

PDF R Script Annotation Overview
PDF   Reference Manual

Details

biocViews DifferentialExpression, Microarray, MultipleComparison, Software
Version 1.40.0
In Bioconductor since BioC 1.7 (R-2.2) (10 years)
License GPL (>= 2)
Depends
Imports tcltk, graphics, grDevices, stats, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source fdrame_1.40.0.tar.gz
Windows Binary fdrame_1.40.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) fdrame_1.40.0.tgz
Mac OS X 10.9 (Mavericks) fdrame_1.40.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/fdrame/tree/release-3.1
Package Short Url http://bioconductor.org/packages/fdrame/
Package Downloads Report Download Stats

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