To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genefilter")

In most cases, you don't need to download the package archive at all.

genefilter

 

   

genefilter: methods for filtering genes from high-throughput experiments

Bioconductor version: Release (3.3)

Some basic functions for filtering genes

Author: R. Gentleman, V. Carey, W. Huber, F. Hahne

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("genefilter")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genefilter")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genefilter")

 

PDF howtogenefilter.pdf
PDF howtogenefinder.pdf
PDF independent_filtering.pdf
PDF independent_filtering_plots.pdf
PDF   Reference Manual
Text   NEWS

Details

biocViews Microarray, Software
Version 1.54.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License Artistic-2.0
Depends
Imports S4Vectors(>= 0.9.42), AnnotationDbi, annotate, Biobase, graphics, methods, stats, survival
LinkingTo
Suggests class, hgu95av2.db, tkWidgets, ALL, ROC, DESeq, pasilla, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me a4Base, ampliQueso, cellHTS2, charm, CNTools, GeneMeta, Hiiragi2013, simpleaffy, sva
Imports Me affyQCReport, annmap, arrayQualityMetrics, Category, cellHTS, DESeq, DESeq2, DEXSeq, eisa, gCMAP, GGBase, GSRI, IHWpaper, JunctionSeq, methyAnalysis, methylumi, minfi, MLInterfaces, mogsa, pcaExplorer, PECA, phenoTest, Ringo, RNAinteractMAPK, simpleaffy, TCGAbiolinks, tilingArray, XDE
Suggests Me AffyExpress, annotate, ArrayTools, BiocCaseStudies, BioNet, categoryCompare, clusterStab, codelink, compcodeR, curatedBladderData, curatedCRCData, curatedOvarianData, estrogen, factDesign, ffpe, ffpeExampleData, gageData, GenomicFiles, GOstats, GSAR, GSEAlm, GSVA, HDF5Array, logicFS, lumi, MAQCsubset, MCRestimate, npGSEA, oligo, oneChannelGUI, phyloseq, pvac, qpgraph, rheumaticConditionWOLLBOLD, rtracklayer, siggenes, Single.mTEC.Transcriptomes, SSPA, topGO, XDE
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source genefilter_1.54.0.tar.gz
Windows Binary genefilter_1.54.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) genefilter_1.51.0.tgz
Mac OS X 10.9 (Mavericks) genefilter_1.54.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/genefilter/tree/release-3.3
Package Short Url http://bioconductor.org/packages/genefilter/
Package Downloads Report Download Stats

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