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genefilter: methods for filtering genes from high-throughput experiments

Bioconductor version: Release (3.3)

Some basic functions for filtering genes

Author: R. Gentleman, V. Carey, W. Huber, F. Hahne

Maintainer: Bioconductor Package Maintainer <maintainer at>

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PDF howtogenefilter.pdf
PDF howtogenefinder.pdf
PDF independent_filtering.pdf
PDF independent_filtering_plots.pdf
PDF   Reference Manual
Text   NEWS


biocViews Microarray, Software
Version 1.54.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License Artistic-2.0
Imports S4Vectors(>= 0.9.42), AnnotationDbi, annotate, Biobase, graphics, methods, stats, survival
Suggests class, hgu95av2.db, tkWidgets, ALL, ROC, DESeq, pasilla, BiocStyle, knitr
Depends On Me a4Base, ampliQueso, cellHTS2, charm, CNTools, GeneMeta, Hiiragi2013, simpleaffy, sva
Imports Me affyQCReport, annmap, arrayQualityMetrics, Category, cellHTS, DESeq, DESeq2, DEXSeq, eisa, gCMAP, GGBase, GSRI, IHWpaper, JunctionSeq, methyAnalysis, methylumi, minfi, MLInterfaces, mogsa, pcaExplorer, PECA, phenoTest, Ringo, RNAinteractMAPK, simpleaffy, TCGAbiolinks, tilingArray, XDE
Suggests Me AffyExpress, annotate, ArrayTools, BiocCaseStudies, BioNet, categoryCompare, clusterStab, codelink, compcodeR, curatedBladderData, curatedCRCData, curatedOvarianData, estrogen, factDesign, ffpe, ffpeExampleData, gageData, GenomicFiles, GOstats, GSAR, GSEAlm, GSVA, HDF5Array, logicFS, lumi, MAQCsubset, MCRestimate, npGSEA, oligo, oneChannelGUI, phyloseq, pvac, qpgraph, rheumaticConditionWOLLBOLD, rtracklayer, siggenes, Single.mTEC.Transcriptomes, SSPA, topGO, XDE
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