To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("globaltest")

In most cases, you don't need to download the package archive at all.

globaltest

Testing groups of covariates/features for association with a response variable, with applications to gene set testing

Bioconductor version: Release (2.14)

The global test tests groups of covariates (or features) for association with a response variable. This package implements the test with diagnostic plots and multiple testing utilities, along with several functions to facilitate the use of this test for gene set testing of GO and KEGG terms.

Author: Jelle Goeman and Jan Oosting, with contributions by Livio Finos and Aldo Solari

Maintainer: Jelle Goeman <j.j.goeman at lumc.nl>

Citation (from within R, enter citation("globaltest")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("globaltest")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("globaltest")

 

PDF R Script Global Test
PDF   Reference Manual

Details

biocViews DifferentialExpression, GO, Microarray, OneChannel, Pathways, Software
Version 5.18.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License GPL (>= 2)
Depends methods
Imports Biobase, survival, AnnotationDbi, annotate, multtest, graphics
Suggests vsn, golubEsets, KEGG.db, hu6800.db, Rgraphviz, GO.db, lungExpression, org.Hs.eg.db, annotate, Biobase, survival, GSEABase, penalized, gss, MASS, boot, rpart
System Requirements
URL http://www.msbi.nl/goeman
Depends On Me GlobalAncova
Imports Me BiSeq, SIM
Suggests Me topGO

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source globaltest_5.18.0.tar.gz
Windows Binary globaltest_5.18.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) globaltest_5.18.0.tgz
Mac OS X 10.9 (Mavericks) globaltest_5.18.0.tgz
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