iSeq

Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models

Bioconductor version: Release (2.14)

This package uses Bayesian hidden Ising models to identify IP-enriched genomic regions from ChIP-seq data. It can be used to analyze ChIP-seq data with and without controls and replicates.

Author: Qianxing Mo

Maintainer: Qianxing Mo <qmo at bcm.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("iSeq")

To cite this package in a publication, start R and enter:

    citation("iSeq")

Documentation

PDF R Script iSeq
PDF   Reference Manual
Text   NEWS

Details

biocViews ChIPSeq, Sequencing, Software
Version 1.16.0
In Bioconductor since BioC 2.7 (R-2.12)
License GPL (>= 2)
Depends R (>= 2.10.0)
Imports
Suggests
System Requirements
URL
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Package Downloads

Package Source iSeq_1.16.0.tar.gz
Windows Binary iSeq_1.16.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) iSeq_1.16.0.tgz
Mac OS X 10.9 (Mavericks)
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