illuminaio

DOI: 10.18129/B9.bioc.illuminaio    

Parsing Illumina Microarray Output Files

Bioconductor version: Release (3.8)

Tools for parsing Illumina's microarray output files, including IDAT.

Author: Keith Baggerly [aut], Henrik Bengtsson [aut], Kasper Daniel Hansen [aut, cre], Matt Ritchie [aut], Mike L. Smith [aut], Tim Triche Jr. [ctb]

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("illuminaio")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("illuminaio", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("illuminaio")

 

PDF Description of Encrypted IDAT Format
PDF R Script Introduction to illuminaio
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Infrastructure, Microarray, ProprietaryPlatforms, Software
Version 0.24.0
In Bioconductor since BioC 2.12 (R-3.0) (5.5 years)
License GPL-2
Depends
Imports base64
LinkingTo
Suggests RUnit, BiocGenerics, IlluminaDataTestFiles(>= 1.0.2), BiocStyle
SystemRequirements
Enhances
URL https://github.com/HenrikBengtsson/illuminaio
BugReports https://github.com/HenrikBengtsson/illuminaio/issues
Depends On Me EGSEA123, normalize450K, RnBeads, wateRmelon
Imports Me beadarray, ChAMP, crlmm, methylumi, minfi, sesame
Suggests Me limma
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package illuminaio_0.24.0.tar.gz
Windows Binary illuminaio_0.24.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) illuminaio_0.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/illuminaio
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/illuminaio
Package Short Url http://bioconductor.org/packages/illuminaio/
Package Downloads Report Download Stats

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