ivygapSE

This is the released version of ivygapSE; for the devel version, see ivygapSE.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6

A SummarizedExperiment for Ivy-GAP data

Bioconductor version: Release (3.23)

Define a SummarizedExperiment and exploratory app for Ivy-GAP glioblastoma image, expression, and clinical data.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("ivygapSE")):

Vince Carey. ivygapSE: A SummarizedExperiment for Ivy-GAP data. doi:10.18129/B9.bioc.ivygapSE, R package version 1.34.0, https://bioconductor.org/packages/ivygapSE.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ivygapSE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ivygapSE")

ivygapSE -- SummarizedExperiment for Ivy-GAP	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GeneExpression, Sequencing, Software, Survival, Transcription, Visualization
Version	1.34.0
In Bioconductor since	BioC 3.6 (R-3.4) (9 years)
License	Artistic-2.0
Depends	R (>= 3.5.0), SummarizedExperiment
Imports	shiny, survival, survminer, hwriter, plotly, ggplot2, S4Vectors, graphics, stats, utils, UpSetR
System Requirements
URL

Suggests	knitr, png, limma, grid, DT, randomForest, digest, testthat, rmarkdown, BiocStyle, magick, statmod, codetools
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ivygapSE_1.34.0.tar.gz
Windows Binary (x86_64)	ivygapSE_1.34.0.zip
macOS Binary (big-sur-x86_64)	ivygapSE_1.34.0.tgz
macOS Binary (sonoma-arm64)	ivygapSE_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ivygapSE
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ivygapSE
Package Short Url	https://bioconductor.org/packages/ivygapSE/
Package Downloads Report	Download Stats