makecdfenv

This is the released version of makecdfenv; for the devel version, see makecdfenv.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

CDF Environment Maker

Bioconductor version: Release (3.23)

This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.

Author: Rafael A. Irizarry <rafa at jhu.edu>, Laurent Gautier <laurent at cbs.dtu.dk>, Wolfgang Huber <w.huber at dkfz-heidelberg.de>, Ben Bolstad <bmb at bmbolstad.com>

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Citation (from within R, enter citation("makecdfenv")):

Rafael A. Irizarry, Laurent Gautier, Wolfgang Huber, Ben Bolstad. makecdfenv: CDF Environment Maker. doi:10.18129/B9.bioc.makecdfenv, R package version 1.88.0, https://bioconductor.org/packages/makecdfenv.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("makecdfenv")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("makecdfenv")

makecdfenv primer	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, OneChannel, Preprocessing, Software
Version	1.88.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 21.5 years)
License	GPL (>= 2)
Depends	R (>= 2.6.0), affyio
Imports	Biobase, affy, methods, stats, utils
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me	altcdfenvs
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	makecdfenv_1.88.0.tar.gz
Windows Binary (x86_64)	makecdfenv_1.88.0.zip
macOS Binary (big-sur-x86_64)	makecdfenv_1.88.0.tgz
macOS Binary (sonoma-arm64)	makecdfenv_1.88.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/makecdfenv
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/makecdfenv
Package Short Url	https://bioconductor.org/packages/makecdfenv/
Package Downloads Report	Download Stats