To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("miRNApath")

In most cases, you don't need to download the package archive at all.

miRNApath

 

miRNApath: Pathway Enrichment for miRNA Expression Data

Bioconductor version: Release (3.1)

This package provides pathway enrichment techniques for miRNA expression data. Specifically, the set of methods handles the many-to-many relationship between miRNAs and the multiple genes they are predicted to target (and thus affect.) It also handles the gene-to-pathway relationships separately. Both steps are designed to preserve the additive effects of miRNAs on genes, many miRNAs affecting one gene, one miRNA affecting multiple genes, or many miRNAs affecting many genes.

Author: James M. Ward <jmw86069 at gmail.com> with contributions from Yunling Shi, Cindy Richards, John P. Cogswell

Maintainer: James M. Ward <jmw86069 at gmail.com>

Citation (from within R, enter citation("miRNApath")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("miRNApath")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRNApath")

 

PDF R Script miRNApath: Pathway Enrichment for miRNA Expression Data
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, DifferentialExpression, NetworkEnrichment, Pathways, Software, miRNA
Version 1.28.0
In Bioconductor since BioC 2.3 (R-2.8) (7 years)
License LGPL-2.1
Depends methods, R (>= 2.7.0)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me oneChannelGUI
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source miRNApath_1.28.0.tar.gz
Windows Binary miRNApath_1.28.0.zip
Mac OS X 10.6 (Snow Leopard) miRNApath_1.28.0.tgz
Mac OS X 10.9 (Mavericks) miRNApath_1.28.0.tgz
Subversion source (username/password: readonly)
GitHub source https://github.com/Bioconductor-mirror/miRNApath/tree/release-3.1
Package Short Url http://bioconductor.org/packages/miRNApath/
Package Downloads Report Download Stats

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