motifStack

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

Bioconductor version: Release (2.14)

The motifStack package is designed for graphic representation of multiple motifs with different similarity scores. It works with both DNA/RNA sequence motif and amino acid sequence motif. In addition, it provides the flexibility for users to customize the graphic parameters such as the font type and symbol colors.

Author: Jianhong Ou, Michael Brodsky, Scot Wolfe and Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at umassmed.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("motifStack")

To cite this package in a publication, start R and enter:

    citation("motifStack")

Documentation

PDF R Script motifStack Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews GenomicsSequence, SequenceMatching, Software, Visualization
Version 1.8.0
In Bioconductor since BioC 2.11 (R-2.15)
License GPL (>= 2)
Depends R (>= 2.15.1), methods, grImport, grid, MotIV, ade4
Imports XML
Suggests RUnit, BiocGenerics, MotifDb, RColorBrewer, BiocStyle
System Requirements
URL
Depends On Me dagLogo
Imports Me
Suggests Me

Package Downloads

Package Source motifStack_1.8.0.tar.gz
Windows Binary motifStack_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) motifStack_1.7.8.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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