Exploratory Data Analysis of LC-MS/MS data by spectral counts

Bioconductor version: Release (2.14)

Exploratory data analysis to assess the quality of a set of LC-MS/MS experiments, and visualize de influence of the involved factors.

Author: Josep Gregori, Alex Sanchez, and Josep Villanueva

Maintainer: Josep Gregori <josep.gregori at>

To install this package, start R and enter:


Citation (from within R, enter citation("msmsEDA")):


PDF R Script msmsEDA: Batch effects detection in LC-MSMS experiments
PDF   Reference Manual


biocViews MassSpectrometry, Proteomics, Software
Version 1.2.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-2
Depends R (>= 3.0.1), MSnbase
Imports MASS, gplots, RColorBrewer
System Requirements
Depends On Me msmsTests
Imports Me
Suggests Me

Package Downloads

Package Source msmsEDA_1.2.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) msmsEDA_1.2.0.tgz
Mac OS X 10.9 (Mavericks) msmsEDA_1.2.0.tgz
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