To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("muscle")

In most cases, you don't need to download the package archive at all.

muscle

 

   

Multiple Sequence Alignment with MUSCLE

Bioconductor version: Release (3.3)

MUSCLE performs multiple sequence alignments of nucleotide or amino acid sequences.

Author: Algorithm by Robert C. Edgar. R port by Alex T. Kalinka.

Maintainer: Alex T. Kalinka <alex.t.kalinka at gmail.com>

Citation (from within R, enter citation("muscle")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("muscle")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("muscle")

 

PDF R Script A guide to using muscle
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, DataImport, Genetics, MultipleSequenceAlignment, SequenceMatching, Sequencing, Software
Version 3.14.0
In Bioconductor since BioC 3.1 (R-3.2) (1 year)
License Unlimited
Depends Biostrings
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://www.drive5.com/muscle/
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source muscle_3.14.0.tar.gz
Windows Binary muscle_3.14.0.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks) muscle_3.14.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/muscle/tree/release-3.3
Package Short Url http://bioconductor.org/packages/muscle/
Package Downloads Report Download Stats

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