To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("nethet")

In most cases, you don't need to download the package archive at all.

nethet

DOI: 10.18129/B9.bioc.nethet    

A bioconductor package for high-dimensional exploration of biological network heterogeneity

Bioconductor version: Release (3.6)

Package nethet is an implementation of statistical solid methodology enabling the analysis of network heterogeneity from high-dimensional data. It combines several implementations of recent statistical innovations useful for estimation and comparison of networks in a heterogeneous, high-dimensional setting. In particular, we provide code for formal two-sample testing in Gaussian graphical models (differential network and GGM-GSA; Stadler and Mukherjee, 2013, 2014) and make a novel network-based clustering algorithm available (mixed graphical lasso, Stadler and Mukherjee, 2013).

Author: Nicolas Staedler, Frank Dondelinger

Maintainer: Nicolas Staedler <staedler.n at gmail.com>, Frank Dondelinger <fdondelinger.work at gmail.com>

Citation (from within R, enter citation("nethet")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("nethet")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nethet")

 

PDF R Script nethet
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, GraphAndNetwork, Software
Version 1.10.0
In Bioconductor since BioC 3.1 (R-3.2) (2.5 years)
License GPL-2
Depends
Imports glasso, mvtnorm, parcor, GeneNet, huge, CompQuadForm, ggm, mclust, parallel, GSA, limma, multtest, ICSNP, glmnet, network, ggplot2
LinkingTo
Suggests knitr, xtable, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package nethet_1.10.0.tar.gz
Windows Binary nethet_1.10.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) nethet_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/nethet
Package Short Url http://bioconductor.org/packages/nethet/
Package Downloads Report Download Stats

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