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nethet

A bioconductor package for high-dimensional exploration of biological network heterogeneity


Bioconductor version: Release (3.18)

Package nethet is an implementation of statistical solid methodology enabling the analysis of network heterogeneity from high-dimensional data. It combines several implementations of recent statistical innovations useful for estimation and comparison of networks in a heterogeneous, high-dimensional setting. In particular, we provide code for formal two-sample testing in Gaussian graphical models (differential network and GGM-GSA; Stadler and Mukherjee, 2013, 2014) and make a novel network-based clustering algorithm available (mixed graphical lasso, Stadler and Mukherjee, 2013).

Author: Nicolas Staedler, Frank Dondelinger

Maintainer: Nicolas Staedler <staedler.n at gmail.com>, Frank Dondelinger <fdondelinger.work at gmail.com>

Citation (from within R, enter citation("nethet")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("nethet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nethet")
nethet PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Clustering, GraphAndNetwork, Software
Version 1.34.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL-2
Depends
Imports glasso, mvtnorm, GeneNet, huge, CompQuadForm, ggm, mclust, parallel, GSA, limma, multtest, ICSNP, glmnet, network, ggplot2, grDevices, graphics, stats, utils
System Requirements
URL
See More
Suggests knitr, xtable, BiocStyle, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package nethet_1.34.0.tar.gz
Windows Binary nethet_1.34.0.zip
macOS Binary (x86_64) nethet_1.34.0.tgz
macOS Binary (arm64) nethet_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/nethet
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/nethet
Bioc Package Browser https://code.bioconductor.org/browse/nethet/
Package Short Url https://bioconductor.org/packages/nethet/
Package Downloads Report Download Stats