phenopath

DOI: 10.18129/B9.bioc.phenopath    

Genomic trajectories with heterogeneous genetic and environmental backgrounds

Bioconductor version: Release (3.8)

PhenoPath infers genomic trajectories (pseudotimes) in the presence of heterogeneous genetic and environmental backgrounds and tests for interactions between them.

Author: Kieran Campbell

Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>

Citation (from within R, enter citation("phenopath")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("phenopath", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("phenopath")

 

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PDF   Reference Manual

Details

biocViews Bayesian, GeneExpression, PrincipalComponent, RNASeq, SingleCell, Software
Version 1.6.0
License Apache License (== 2.0)
Depends
Imports Rcpp (>= 0.12.8), SummarizedExperiment, methods, stats, dplyr, tibble, ggplot2, tidyr
LinkingTo Rcpp
Suggests knitr, rmarkdown, forcats, testthat, BiocStyle, SingleCellExperiment
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me splatter
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package phenopath_1.6.0.tar.gz
Windows Binary phenopath_1.6.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) phenopath_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/phenopath
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/phenopath
Package Short Url http://bioconductor.org/packages/phenopath/
Package Downloads Report Download Stats

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