To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("procoil")

In most cases, you don't need to download the package archive at all.

procoil

 

Prediction of Oligomerization of Coiled Coil Proteins

Bioconductor version: Release (3.1)

The procoil package allows to predict whether a coiled coil sequence (amino acid sequence plus heptad register) is more likely to form a dimer or more likely to form a trimer. The predict function not only computes the prediction itself, but also a profile which allows to determine the strengths to which the individual residues are indicative for either class. Profiles can also be plotted and exported to files.

Author: Ulrich Bodenhofer

Maintainer: Ulrich Bodenhofer <bodenhofer at bioinf.jku.at>

Citation (from within R, enter citation("procoil")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("procoil")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("procoil")

 

PDF R Script PrOCoil - A Web Service and an R Package for Predicting the Oligomerization of Coiled-Coil Proteins
PDF   Reference Manual
Text   NEWS

Details

biocViews Classification, Proteomics, Software
Version 1.18.0
In Bioconductor since BioC 2.8 (R-2.13) (4.5 years)
License GPL (>= 2)
Depends R (>= 2.12.0)
Imports methods, stats, graphics
LinkingTo
Suggests Biostrings
SystemRequirements
Enhances
URL http://www.bioinf.jku.at/software/procoil/ https://github.com/UBod/procoil
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source procoil_1.18.0.tar.gz
Windows Binary procoil_1.18.0.zip
Mac OS X 10.6 (Snow Leopard) procoil_1.18.0.tgz
Mac OS X 10.9 (Mavericks) procoil_1.18.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/procoil/tree/release-3.1
Package Short Url http://bioconductor.org/packages/procoil/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center